![]() ![]() Don’t display cross assign PSM by default.Add possibility to navigate from Cluster to Site.Add contextual menu in Cluster table to “view co-localized clusters”.Adapt to large number of PTMs (scrollbar, resizable, select/unselect all).Fixes error in default value for abundances.edit cluster: modify annotation or remove peptides from the cluster.add annotation information to clusters: selection Level, description, notation.Modifications process and visualisation.Huge refactoring to remove framework dependency.Add a low-level configuration mechanism to allow the modification of some “hidden” parameters.X!Tandem import failed due to duplicate in databases.Error in Spectral count that could occur in some very specific conditions.Peptide raw abundance was modified during Post Processing.Generate Spectrum matches : was long + failed in specific case.“Quantified Peptide” export sheet added for MS1 quantification datasets.This filter keeps the best PSM for a specific query’s pretty rank, using the same rules as Single PSM per Pretty Rank Once the PSM is identified it also keeps all PSMs with the same sequence (without considering PTMs) New PSM filter: Single Sequence per Pretty Rank.Variable PTM was lost when at the same position on the peptide sequence than fixed PTM.First version to allow multiple imports at the same time, one per group of projects in the limit of the maximum number of allowed thread Add Peptide Match disambiguated sequence properties (where corresponding AA replaces X/J).Add Fragmentation Rule Set information in merged dataset, if same value in all children.Merged peptide matches will reference child’s ‘spectrum matches’ in order to display spectrum annotation.Bug fixes in peakel smoothing and isomeric peptides computation.Some label free quantitation improvement.The 2.2.0 version also includes several improvements and fixes detailed here after. A significant work has been done on the visualisation and exploitation of these two concepts. The previous version introduced a clear distinction between modification sites and clusters of modifications. This new release improves the PTMs oriented functionalities. ![]()
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